As long as neither of the filament connections are connected to the secondary of the second transformer, the filament will be independent of the B+.
Other connections are possible. You can use 1 secondary of the first transformer for the filaments, and the other secondary connected in parallel to both primaries of the second transformer for an AC voltage approximately equal to the mains. If you connect the primaries of the second transformer in series, you will get about 1/2 the AC mains voltage.
If you want substantially more DC high voltage out, you can use a FW voltage doubler rather than a FW or bridge rectifier.
You can also use a different second transformer if you want a different step-up ratio.
My own favorite hack using a step-down transformer for a tube circuit supply is to use a dual primary, dual secondary transformer. One primary is connected to the mains, the other "primary" becomes the high voltage "secondary". The two low voltage windings supply the filaments.
I show how to do this here (also using the FW doubler):
http://www.frontiernet.net/~jff/af2b/Dual_Channel_Blackface-style_Preamp_for_Bass_Guitar.htmlThe VA rating of the transformer is essentially cut in half, because only one primary is connected to the mains. This 12 VA transformer works fine for a couple of 12AX7's.
I don't like the "back-to-back" thing, because 2 transformers take up more space in the chassis. I suppose it's ok if you want to power your circuit "wall wart" style with the first transformer outside the chassis, and only low voltage AC entering the chassis.
If you have 220 VAC mains, a full wave bridge will probably give you a high enough B+. You didn't say how high you wanted the high voltage to be.
You can dump excess B+ voltage (and filter the output well) with an extra RC stage for your filter. Once again, if you're just powering 12AX7's, then it's usually no big deal to dissipate the excess with resistance.
Jon