Hi Dude,
From some of the research I've done, perhaps your issue is to do with the plate resistors, especially the ones located under the board where the tubes mount. Also, I would recommend reflowing all the solder in the tube sockets, and perhaps the ribbon cables and shielded signal lines as well, you need to support these well so they don't move when you reflow the joints. Another thing I've found, on the HRD at least, is the coupling caps fender used are not rated for the full B+, so if I have the tubes out taking voltages, or if I start up without standby, they are hit with way too much voltage, so I replaced all of them with 630v components.
I'm no expert by any means, but I have been finding these boards are a lot more robust than they're given credit for. In fact, most issues I've had have been from too little heat, or not giving the iron that extra second after the solder has flowed to get a good joint between the pad and the component. I also have been using good rosin coated copper braid to remove all the solder. I don't try to reuse any parts, so I'll cut them off from the top side before removing the wire from the bottom so I'm not putting extra stress on the pads or traces. If I'm replacing several parts at a time, I'll also clean the pads before I solder new parts in, as well as clean everything after. Every time I have the board out, I'll check all the connections on the board, and reflow any questionable ones I may have missed the last time I had it out.
I need to force myself to be patient and take my time, whenever I get frustrated I'll just walk away for a few hours or days and it's more of an enjoyable, zen thing than a hassle. Of course I have the luxury of owning the amp, I doubt a customer would be overly impressed with waiting extra time, but it ends up being a better job, and I learn more as I go. So far, knock on wood, I haven't had any major problems, and it all still looks tidy and not like a gorilla has been poking around in there with a sharp burning stick.
Check out some youtube videos with computer repair and such, you'll see that those guys really put these pcb boards to the test, and don't have many issues with traces or pads being pulled up. They just have certain techniques they use, as well as proper tools. Mr Carlson's lab has some great tips, as well as Psionic Audio, especially applying to the blues jr. and hot rod deluxe.
Anyways, good luck, and don't stress too much, everything can be fixed, and if not you have a good base for a new build.