Hi,
I have a Pro Junior, bought it new when they came out in about '93, so mine is a Rev C board, same as your schematic. They are great sounding amps when you wind them up. Jeff Beck has been gigging with a pair of them. They suffer from noise/hum problems and excessively hot output valves, same hot bias problem with the Blues Junior. I've added additional PSU filtering to mine and a couple of tweaks to make it like the later board revisions. I've recently replaced the on-board jack/pots with panel mount and run screened cable back to the board - made the hum worse!
Anyway, I'd be very interested in swapping out the board for a turret version, maybe I can help? Photo's, measurements??
A few thoughts on this:
1 You've gone for the Rev B/C version - later ones increased the PSU filter cap values, added a cathode bypass cap on the first stage (I've done that but made it switchable - useful for some earlier break up as these amps are loud without any master volume), and tweaked the network between V1A and B. I'd suggest looking up the schematic for the later versions and basing your design on that. Certainly provision for a V1A cathode bypass cap would be good.
2 For the bias I removed R29, drilled a couple of holes in the board and fitted a 47K trimmer in it's place, wired as a variable resistor - one end shorted to the wiper. This gives sufficient range to increase the bias (more -ve). Yes, ideally it should have a series resistor to set a minimum for safety, but that would have involved more PCB surgery than I wanted!
3 I'd keep the conjunctive filter across the output. EL84 amps can be probe to fizz, I'd at least make provision for it so people can choose to fit or not.
4 Likewise I'd keep the LTPI 47pF cap.
5 The amp is constructed on two PCB's - the main one and another for the valve bases. Solid core ribbon cables link the two. The LED mounts remotely from the valve base PCB on twisted pair cable. There's a nasty plastic holder that clips it into the chassis/faceplate. the clip is easily broken (guilty) and I've thought of replacing mine with a Fender jewel lamp.
Hope that helps, let me know if you want more details.