One trick I learned is that I had to identify between 60 and 120hz.
120Hz hum is post rectified HT. 60Hz is heaters or an errant signal.
If you take another amp, plug in a guitar cable and touch the tip of the cable, thats 60Hz.
JCM 800 is a high gain amp, Lead dress COULD be at fault, chopstick your leads, especially near the tube sockets and your FX loop mod. Making it worse is almost as good of a sign as making it better,gives you a place to start.
You sure it's not your heater wires?
Did you phase the heater wires? with the tubes pulled you can check continuity and make sure one wire supplies pins 4-5 and the other pin 9. It is my understanding that this provides a sort of humbucking effect for heater hum.
Parallel wires?
OH! does the hum increase with the volume control? what controls affect it?
And double check the ground scheme. Doug's method has proven itself time and again.
How is Doug's grounding scheme different than what Cieratone suggested? PRR has suggested many times to build a proven design. I've never read a bad review of Cieratone, so why would we want to change their grounding scheme?
Just a few thoughts, Good Luck! and as Tubenit has advised me, "Go SLOW, be patient, DON'T GET DISCOURAGED!"
Ray