The current builds' Hammond does have end-bells.
Yes it does but the other PT has end bells
and a copper band.
If the wires are originating from the same side of the OT, It's not going to make any difference if they are together, or not together, further up the line.
But it looks like yours are not coming from the same side. And I respectfully disagree, it can make a difference. The more contact they have the more bad effects can add up. It's also best to
always tightly twist
all pairs or trios of wires from the same wind to limit any stray EM/ES radiation because of opposite field cansulation. It can't do any harm and might stop an amp from having problems.
If you take an extension cord and run it up close parallel with a guitar or speaker cord for say 20', you
will get/have problems than if you were to have them only touch at 1, 90 deg. intersection. You believe in twisting the heater wires right? Why not other PT, choke and OT wires? Same principle whether all the wires come from the same side/hole in the end bell.
It could also be said that the amp would be quieter if you would have put the end bells of the PT facing to the front and back of the chassis and the OT end bells facing left to right, length wise with the chassis.
This way the bulk of the EM/ES radiation from the PT does not go towards the OT and the input stages and input jack.
Now put the OT primary facing towards the input end of the chassis with it's secondary facing towards the PT end.
The smaller a chassis you use (and with higher gain amps) the more this stuff matters. Plus a SE amp losses the noise rejection/cansultation that a PP amp has natural built into it's power stage.
I still think you'll find/fix the problem or one of the other guys will figure it out.
Brad