RCA jack: No reading (black probe on chassis RCA jack ground tab and red probe on chassis RCA jack tip, NFB wire disconnected, only the OT secondary wire remains)...
I'm assuming when you say 'no reading' you mean infinity, an open circuit, the same indication you get with the probes hanging in the air? If so, that ain't good. That says the secondary of the OT is open. I'll bet it's probably good and the solder connection of the wire attached to the frame of the OT is bad. I highly recommend clipping that wire from the OT frame and soldering it directly to the ground lug on the RCA jack. Then recheck the resistance on the RCA jack.
Measured 0.1V on both 6V6 sockets between pins 2 and chassis.
You did have the power turned on, right?
What I don't get is why my previous MM blew up when I touched pin 3 of V3 with the red probe. It was set on the 1000VDC setting. Don't get it.
My suspicion was wrong phase on the NFB causing the amp to oscillate/squeal loudly. That's why I wanted the NFB disconnected. And since the OT secondary is open this loud squeal caused a high voltage spike to be reflected back to the primary (plates). This is what killed your other meter. This is just a theory and has not been proved yet.
it still burns... Smoke came up...
What is burning? You don't have the 100Ω resistors back on the filament circuit do you?
I'm beginning to suspect another wiring error. Pull the rectifier tube and insure that all tube filaments light up.