I've used PTP, terminal strips, turret boards, tagboard and eyelet boards. I prefer the turret boards. IF the tagboards were sturdier for experimenting with mods, I would prefer them. I like the multiple connections to wire something up.
IF it is a known and proven amp design, I like Hoffman's layout design. IF it is an amp where I will be experimenting and designing a lot, then I prefer paralleled turrets like on HiWatt or Vox.
When possible, I like stand up power transformers & prefer 300-0-300 so when I use rectifiers, I can use a 5Y3GT for 330v, 5V4 for 360v, GZ34 for 390v or Doug's solid state plug in for 420v. This allows me to use 6V6 or 5881/6L6 tubes.
I prefer cathode biased, so I can simply plug in a 6V6 or 5881/6L6 which are my favorite tubes.
I've gotten to where I use 5751 tubes or 12AY7's more often then I use to. Both my current amps only have 12AX7's in the LTPI.
I always use Doug's grounding scheme.
I've gotten to where I only use shielded wire sparingly and when needed.
When trying to mod something, I make fewer tweaks at a time and play them for a while before I make a final decision about keeping them. Early on , I made too many changes too quickly.
I never start an amp until I've drawn the schematic and layout that I will be using as a starting place.
I check for cap foil orientation most of the time with higher gain amps.
I'm using smaller cathode cap values like 5uf instead of 22uf or 25uf. Sometimes I use 10uf.
IF the amp has an LTPI, I always install an "enhance cap".
I've recognized some cap preferences for certain designs.
I've gotten to where I prefer delay over reverb (but still like both) and am installing active effects loops more often then not.
There are all just personal preferences and not necessarily "better". Keep in mind, I have never built a clone of a manufactured or boutique amp. I steal and borrow and adapt ideas for those amps, but typically prefer experimenting to see what I can come up with.
With respect, Tubenit