A sidebar for a few things about your scope...
First, which trace is CH1? That's always important for us to know.
First, thank you for your patience above and beyond the call of duty. I do technical support of various kinds in my line of work (disaster restoration and environmental remediation) and sometimes I think to myself, "where do I even start with this guy?" I assure you that I wasn't nor am not completely high while working with my scope although in retrospect, the evidence does not support that. Again, my thanks for the remedial scope training... I obviously need it. I do think I was just pushing buttons until the scope made nice pretty traces, but didn't change them back... I see now that they were all jacked up.
So... CH1 is the top trace.
Bottom line, ALT/CHOP, CH2 INV, and TRIG ALT should be left in the undepressed position unless you know what they do and have a particular reason to use them. CH2 INV can be useful occasionally. One use would be viewing the two out of phase signals from the phase inverter. You can invert the CH2 display and overlay CH1 and CH2 traces to see how closely matched they are. Always keep in mind though, that you are only inverting the display, not the actual signal.
Got it, I think all the settings are correct now (check in photos below).
So, with things on the scope set up differently/correctly: CH1 is the top trace, set to x1 on the probe, Voltage/Div set to 5V, and connected to Plate 1 of V1 (but after the cap)... so basically just showing the stable signal flowing out of the first stage. CH2 is the bottom trace, set to x10 on the probe, Voltage/Div set to 2 (so every square = 20V if I'm understanding how this all works); it is connected to Plate 2 of V1 (but after the cap)... so showing the signal after stage 2 and before the EQ stuff. The 3 picts below are all set up this way and:
Pict 1 is the resulting traces with the gain set at 25%
Pict 2 is with the gain at 50%
Pict 3 is with the gain at 75%
So... It seems that V1 is just starting to send a clipped signal on to the next stage when the gain pot is turned to around 70%. Doesn't all this seem to indicate that the first two stages (i.e. V1) is functioning within reason? I haven't changed any components from the schematic, but I DO still have V2 bypassed completely. Also I have that resistor to ground on the gain pot bypassed straight to ground, FYI.