This is from Dave Funk's book "tube amp workshop". There's a list in the back that has many/most of the Fender amp trans set code #'s. Where he got them (and how true they are), book doesn't say.
Name Model PT Choke OT Ohms Tubes
5F4 Super 8087 14684 45216 4 3 @ 12_7 2 @ 6L6 1 @ 5U4G
5E5-a Pro 6516 125C1A 1846 8 3 @ 12_7 2 @ 6L6GB 1 @ 5U4GA
5E7 Bandmaster 67233 125C1A N/A 2.6 3 @ 12_7 2 @ 6L6G 1 @ 5U4G
5E9-a Tremolux 8160 14684 108 8 3 @ 12_7 2 @ 6V6GT 1 @ 5Y3GT
5G9 Tremolux 8160 14684 108 8 3 @ 12_7 2 @ 6V6GT 1 @ 5U4GB
The book shows schemos for 5E4-a Super and 5G9 Tremolux using the same tube type and count, so using the same PT would be an easy factory option.
All Super's before (5B4, 5C4, 5D4) the 5E4 and 5E4-a models and after (5F4, 6G4, 6G4-a, AA763, AB763, ect.) all used 6L6's. Only (from whats shown/listed) the 5E4 and 5E4-a used 6V6's.
The 5G9 schemo has a factory written note > "Late 5E9-a models are similar to this (5G9) model". So late 5E9-a was a transitional model. This could be why the 5E9-a schemo (of early model?) he shows, has 5Y3 instead of the 5U4 rectifer tube that was used in the 5G9.
If your 5E4-a has a different OT code # than any of the ones listed here, post it and I will try to match it up for you to a model from his chart.
He has no code #'s listed for 5E4 & 5E4-a models, this is interesting IMO, maybe not many of these 2 models were made? If so, it make's it possibly more of a valueable model, which would only add to the advice given above as to not mess with it. The schemo's show tubes as > 3 @ 12_7 2 @ 6V6GT 1 @ 5U4GA and shows 2 speakers (10's ?) were used in both models, if so, for a Fender it should be 4 ohms for OT secondary.
Hope this is helpfull to you.
Brad