Connected with the tube in I am getting 5.7 volts on pin 2 and 0 volts on pin 8.
Stop and consider a hypothetical case:
The Super Reverb's 5v winding is connected only to the rectifier tube's pin 8 and 2. There is no ground reference, and no other connection to the "outside workd" except the wire from pin 8 to the filter caps. You measured (presumably from pins to chassis) 5v+ at pin 2 and 0v at pin 8.
Hypothetical: If the B+ rail is shorted to ground, pin 8 is therefore connected to ground. It would measure 0vac between it and ground; however, pin 2 would measure the full voltage of the 5v winding. A shorted B+ rail would also blow the fuse.
Your situation seems to match the hypothetical. You mention the transformer is 3 months old, so that would indicate recent tinkering. If the amp was not blowing fuses prior to tinkering, suspect anything/everything involved in the recent changes. A B+ short to ground could be a failed filter cap (if it failed short rather than open), but could also be a solder blob connecting a plate/screen pin to something else (probably ground). It could also be a bare strand of wire at a tube socket contacting the chassis, a solder blob on the filter cap board, or a fault in the wiring from the cap board to the main eyelet board.
If you first inspect everything recently tinkered, you will probably reduce your troubleshooting time.
Also, Sluckey's initial guidance to disconnect the rectifier from the "outside world" (the wire from pin 8 to the cap board) would test/eliminate a failed rectifier tube as the cause of the blown fuses.
If you inspect all wiring/solder joints and find no faults, you might try the following to isolate the failed cap. Unsolder the negative lead of all the caps from the grounded eyelets on the cap board (be VERY careful!!). Apply power. Fuse good? Re-connect the first filter cap pair, reapply power and see if the fuse blows. Proceed one at a time, reconnecting caps until you find the one that blows a fuses (or make a lightbulb limiter shine brightly). Replace the obviously failed cap.
Of course, if all the caps are the same approximate age (and known-old) you might practice preventive medicine and replace them all. This approach will not solve a shorted B+ due to solder/wire fault/error, but it might highlight that a cap is not the source of the short.