... As a Mech Engineer veteran of 30+ years ...
Oh god, a mech is gonna mess with wiring!!

Just kidding; I was briefly in school for electrical engineering, and I can't say I did great with the introductory stuff for mechanical or civil engineering.
I'll need to digest your layout a little, as circuit elements are faster to spot in a schematic.
However, one question does come to mind: are you planning to use a sloped-front chassis like the Fender original? If so, you'll want to model the physical size of those filter caps arranged near the front panel, as well as the size/depth of the pots. If you use Sprague Atoms, they likely won't fit. Then again, you don't gain anything by using Atoms instead of more modern, and smaller, axial caps like Nichicon. Most modern caps will be small enough to fit easily.
Since your two channels will be similar outside of the mid control, you may want to change tone stack values. Right now, you have 250pF/0.047uF/0.1uF for both channels. I'd highly recommend changing one channel to 250pF/0.022uF/0.022uF to give an alternate sound. I have tried this setup before, and it gives a similar but less-muddy bass. The treble cap (250pF) could probably be swapped to another value as well, but you'd want to breadboard that and see what gives you the sound as response you like. Or you could taste test in the completed amp.
I gather from your first post you want largely clean sounds. What guitars do you use most often, and what recording most captures the sound you're after?