When taking DC resistance measurements, you attach the meter probes to each end of the thing that you are measuring the DC resistance of.
I know that, but a resistor is entirely different to a PT primary or secondary. My original post stated; take the measurement from across the primary winding where they connect at the mains switch?
Operation in use may be different, but resistance is still resistance whether you're talking about a length of wire (transformer winding) or a carbon/metal mixture sprayed on a rod and spiral-cut (resistor).
That said, a useful number for transformer primary/secondary resistance is a little more involved. It's also easier/safer if you do this with a transformer not installed in an amp (and obviously never plugged in or energized).
Step 1: Measure resistance of the high voltage secondary end-to-end and end-to-center-tap.
Step 2: Measure resistance of primary end-to-end.
Step 3: Note the voltage ratio of primary to the entire secondary (say 220v pri, 345-0-345v sec; ratio is 220:690 or 1:3.14)
Step 4: Find the impedance ratio primary to secondary (voltage ratio, squared; for our example ~9.84)
Step 5: Multiply the measured primary resistance by the impedance ratio to get "primary resistance, referred to the secondary"
For most calculations, you will use secondary resistance plus "primary resistance, referred to the secondary" because the latter better shows how the secondary voltage you're interested in is responding to the resistance of the primary.
Depending on the calculation involved, you may only be using half of the total measured secondary resistance. It depends on what you're trying to know and how the transformer is being used; I'm sure Merlin probably mentions what portion of total resistance to use if he presents calculations based on those facts.