Well, I have my DR up and running. I'm not sure what the problem was because I didn't trace a signal through the amp, but it is now sounding much closer to what I want to hear. I think I'll be there when I get the 2-10s installed (I don't even have them yet).
What I did was basically clean-up. The DC carrier from the rectifier to the standby switch, and back a bit was bundled with the heater and A/C supply. Changed that. Took the buss wire from the backs of the pots originally to replace it with sort of a buss/star combination, but I went back with the Marshall style buss, but this time I terminated at a bolt in the chassis by the normal side input jack, right at the corner of the board. Went with 1 input per channel with a 33K grid stopper mounted on the socket pin. I also did a neater job of wiring with the shielded cable than the first time around. I put the normal channel caps back on the board, using PS series OD caps, A .1 and a .022, and a Silver Mica 680pf for the treble. Changed the treble cap on the vibrato side to a 250pf poly-styrene. Changed the .1 in the PI from a 630V Mallory to a .1 400V, just for aesthetics. And the PI supply cap from 40uf to 20uf.
When I fired it up I was expecting a lot of noise, was ready to start moving wires around, but the amp is very quiet now. I can dime the volume, both tones and the reverb with a Strat plugged in (with said Strat turned the right direction) and while it is not silent, it ain't that far from it. And the chassis was directly under a 4 bulb fluorescent light fixture, 30" above it.
I lined the top of the cabinet with aluminum foil before I buttoned it up again. Now I think it's even quieter!
I'm shocked that it sounds as good as it does. I know I prefer the poly-styrene to the SM I had in the vibrato side to begin with, and I prefer the way the normal channel is now, although I do not know how much of that can be attributed to the cap change versus the tone stack's position. All the notes I play now sound much clearer and the amp is just more musical now. Maybe the 40uf was too much for the PI, but it "feels" better now too. I'm perfectly happy with the OT as is.
New amp honeymoon? Maybe. All I know is that I had previously made some small mistakes that made a potentially great amp sound mediocre. Because it sounds great now.
Thank you for your help.