I smoked the 100 ohm/3watt resistor (bias tap).
That resistor should be 100,000Ω, not 100Ω. If you used a 100Ω then that's why it smoked. While it was smoking, D1, R65 (bias pot), R66 (22K), and C32 (47µF) were being severely stressed and may also need replacing. Remove the 6V6 tubes and don't put them back in until the bias circuit is healthy. To check that it is healthy, measure the voltage on pin 5 of each 6V6 socket. It should be approx. -30vdc to -40vdc. Set this voltage to the maximum using the bias pot.
I had a problem following the layout provided when it came to connecting the can capacitor 40/20/20/20 to the board and the rectifier. Specifically rectifier pins 6,2 ? I know one goes to the 40uF and the other to the bias range resistor. I'm not clear on which goes to which.
The cap can only connects to the board. It does not connect to the rectifier socket. Connect 4 wires from the cap can to the board points A, B, C, and D. Use the attached pic. Connect the negative terminal of the cap can to a lug at a power transformer bolt.
The rectifier pin 2 only connects to a yellow wire from the PT. It connects to nothing else. The rectifier pin 8 has the other yellow wire from the PT and it also has a wire that connects to the STBY switch. The other side of the STBY switch connects to the board point A. Point A will have two wires connected, one to the 40µF, the other to the STBY switch.
Connect a wire from the rectifier pin 6 to the board at the turret called "Bias Tap".