Hello Grees,
Welcome to the forum! I'm sure you will find (like I did) that the members and moderators of this forum will give you great advice on building and troubleshooting an amp. You've come to the right place.
I am literally in the middle of a JTM45 build, which is the UK sibling of the Fender Bassman. While opinions vary, either one of these amps is considered by many the Holy Grail of classic guitar tone.
Prior to starting my JTM45 build, I was thinking of incorporating many of the same things you listed....switchable rectifiers, switching for different NFB resistors, switchable 6V6/KT66, and also things like switchable cathode resistors on V1, different "eras" for tone stacks, etc. I settled on just building pretty much a bone stock JTM45. Why?...two reasons...1) the amp is classic for a reason. Why implement a build with all of these bells and whistles I might not even want or like, and 2) adding these other features exponentially complicates things, especially for a novice builder trying to get through the troubleshooting phase.
Once you build the amp and get it up and running, you can start implementing these other features. If you are creating your own turret board (like I did for my JTM build) you can think ahead and have spaces on your board layout that will be ready to go when you get to the point of trying them out. For example, I have a spot on my board for a split cathode on V1, but will start off with the shared cathode.
I think your best bet for easily incorporated mods would be the switchable NFB, possible switch for shared/split V1 cathode, and maybe a switchable bypass cap on V2a ("lead voicing" maybe?). You could install temporary switches on the side of the chassis (vs front or rear) to avoid any permanent changes to the panels, and once you decide on the ones you like, you can incorporate those on the front or real panel.
Hope this helps, and best of luck with the process! Once you get started on this, it becomes an addiction.